Objective By observing the clinical effect on treating swallowing disorder after stroke by special training on acupuncture joint swallowing， it can make reference to treat clinical swallowing disorder after stroke. Methods we cheese 120 patient treated in our hospital from October 2013 to October 2015， and divided them into control group and observe group， 60 patients in each group. We treated the control group in the normal way， and except the normal way， we also used special training on acupuncture joint swallowing to treat the observe group. Two months later， we made comparation for the two groups patients’ swallowing before and after by the water swallowing test， and then， analysis the clinical meanings for treating swallowing disorder after stroke by special training on acupuncture joint swallowing. Results Before the treatment， there was no significant difference between the two groups（P>0.05）. After two months’ treatment， the first and second class structure in water swallowing test increased obviously and the fourth and fifth class structure had visibly deteriorated in the two groups， the classification structure after treatment， in the two groups’ water swallowing test had statistical difference between the two groups（P<0.05）. After treatment， the observe group， first and second class structure in water swallowing test was higher compared with control group， there was statistical difference between the two groups（P<0.05）. Conclusion Compared with the patients only treated in normal treatment， these patients treated on special training were better in swallowing， which has high clinical value to patients who have swallowing disorder after stroke.